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" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>C>A</td>\n",
" <td>ACA</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>2</td>\n",
" <td>...</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>C>A</td>\n",
" <td>ACC</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>...</td>\n",
" <td>1</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>2 rows × 9693 columns</p>\n",
"</div>"
],
"text/plain": [
" Mutation type Trinucleotide ALL::TARGET-10-PAIXPH-03A-01D \\\n",
"0 C>A ACA 0 \n",
"1 C>A ACC 0 \n",
"\n",
" ALL::TARGET-10-PAKHZT-03A-01R ALL::TARGET-10-PAKMVD-09A-01D \\\n",
"0 0 0 \n",
"1 0 0 \n",
"\n",
" ALL::TARGET-10-PAKSWW-03A-01D ALL::TARGET-10-PALETF-03A-01D \\\n",
"0 1 0 \n",
"1 1 0 \n",
"\n",
" ALL::TARGET-10-PALLSD-09A-01D ALL::TARGET-10-PAMDKS-03A-01D \\\n",
"0 0 0 \n",
"1 0 0 \n",
"\n",
" ALL::TARGET-10-PAPJIB-04A-01D ... Head-SCC::V-109 Head-SCC::V-112 \\\n",
"0 2 ... 0 0 \n",
"1 0 ... 1 0 \n",
"\n",
" Head-SCC::V-116 Head-SCC::V-119 Head-SCC::V-123 Head-SCC::V-124 \\\n",
"0 0 0 0 0 \n",
"1 0 0 0 0 \n",
"\n",
" Head-SCC::V-125 Head-SCC::V-14 Head-SCC::V-29 Head-SCC::V-98 \n",
"0 0 0 0 1 \n",
"1 0 1 0 0 \n",
"\n",
"[2 rows x 9693 columns]"
]
},
"execution_count": 8,
"metadata": {},
"output_type": "execute_result"
}
],
"source": [
"other_wes_mut = pd.read_csv(\"./project_data/catalogs/WES/WES_Other.96.csv\")\n",
"other_wes_mut.head(2)"
]
},
{
"cell_type": "code",
"execution_count": 9,
"metadata": {},
"outputs": [
{
"data": {
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"<div>\n",
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"<table border=\"1\" class=\"dataframe\">\n",
" <thead>\n",
" <tr style=\"text-align: right;\">\n",
" <th></th>\n",
" <th>Cancer Types</th>\n",
" <th>Sample Names</th>\n",
" <th>Accuracy</th>\n",
" <th>SBS1</th>\n",
" <th>SBS2</th>\n",
" <th>SBS3</th>\n",
" <th>SBS4</th>\n",
" <th>SBS5</th>\n",
" <th>SBS6</th>\n",
" <th>SBS7a</th>\n",
" <th>...</th>\n",
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" <th>SBS58</th>\n",
" <th>SBS59</th>\n",
" <th>SBS60</th>\n",
" </tr>\n",
" </thead>\n",
" <tbody>\n",
" <tr>\n",
" <th>0</th>\n",
" <td>ALL</td>\n",
" <td>TARGET-10-PAIXPH-03A-01D</td>\n",
" <td>0.529</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
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" <td>0</td>\n",
" <td>0</td>\n",
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" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" </tr>\n",
" <tr>\n",
" <th>1</th>\n",
" <td>ALL</td>\n",
" <td>TARGET-10-PAKHZT-03A-01R</td>\n",
" <td>0.696</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
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" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>1</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" <td>0</td>\n",
" </tr>\n",
" </tbody>\n",
"</table>\n",
"<p>2 rows × 68 columns</p>\n",
"</div>"
],
"text/plain": [
" Cancer Types Sample Names Accuracy SBS1 SBS2 SBS3 SBS4 \\\n",
"0 ALL TARGET-10-PAIXPH-03A-01D 0.529 0 0 0 0 \n",
"1 ALL TARGET-10-PAKHZT-03A-01R 0.696 0 0 0 0 \n",
"\n",
" SBS5 SBS6 SBS7a ... SBS51 SBS52 SBS53 SBS54 SBS55 SBS56 SBS57 \\\n",
"0 0 0 0 ... 0 0 0 1 0 0 0 \n",
"1 0 0 0 ... 0 0 0 1 0 0 0 \n",
"\n",
" SBS58 SBS59 SBS60 \n",
"0 0 0 0 \n",
"1 0 0 0 \n",
"\n",
"[2 rows x 68 columns]"
]
},
"execution_count": 9,
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}
],
"source": [
"other_wes_act = pd.read_csv(\"./project_data/activities/WES/WES_Other.activities.csv\")\n",
"other_wes_act.head(2)"
]
},
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