From 17d485ddae13ab52d66b9901d3f477f934f3014c Mon Sep 17 00:00:00 2001
From: Arpit Merchant <arpit.merchant@helsinki.fi>
Date: Tue, 13 Jun 2023 18:08:07 +0300
Subject: [PATCH] intermediate clean up.
---
thesis/review_version/macros.tex | 86 ++++++++++++----------
thesis/review_version/sample_article_1.tex | 16 +++-
thesis/review_version/thesis.tex | 22 ++----
3 files changed, 70 insertions(+), 54 deletions(-)
diff --git a/thesis/review_version/macros.tex b/thesis/review_version/macros.tex
index ab5838b..0332e5b 100755
--- a/thesis/review_version/macros.tex
+++ b/thesis/review_version/macros.tex
@@ -2,85 +2,95 @@
% Load Packages
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\usepackage[latin1]{inputenc}
-\usepackage{pdfpages}
-% This package sets the margin width
-% (change "right" if you want them wider, but then change the 34.8pt in \note bigger too)
-\usepackage[top=1.2in, bottom=1.5in, left=1in, right=1.6cm]{geometry}
-\usepackage{latexsym}
-\usepackage{graphicx}
-
-\usepackage[lined, boxed, ruled, commentsnumbered, noend]{algorithm2e}
-\usepackage{algpseudocode}
-\usepackage{bbding}
+% fonts
+\usepackage{showframe}
\usepackage{bm}
+\usepackage{bbding}
\usepackage{cancel}
-\usepackage{colortbl}
-\usepackage{enumerate}
-\usepackage{mathtools}
-\usepackage{multirow}
\usepackage{pifont}
\usepackage{savesym}
-\usepackage{subcaption}
-\usepackage{thmtools,thm-restate}
+\usepackage{latexsym}
+\usepackage[latin1]{inputenc}
+\usepackage[square,numbers]{natbib}
+
+% figures
\usepackage{tikz}
+\usepackage{graphicx}
+\usepackage[top=1.2in, bottom=1.5in, left=1in, right=1.6cm]{geometry}
+
+% math and algorithms
+\usepackage{mathtools}
+\usepackage{enumerate}
+\usepackage{algpseudocode}
+\usepackage{thmtools,thm-restate}
+\usepackage[lined, boxed, ruled, commentsnumbered, noend]{algorithm2e}
+
+% tables
\usepackage{float}
\usepackage{caption}
+\usepackage{subcaption}
\usepackage{booktabs}
+\usepackage{colortbl}
+\usepackage{multirow}
+
+% inserts
\usepackage{lipsum}
-\usepackage[square,numbers]{natbib}
+\usepackage{pdfpages}
+\usepackage{emptypage}
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% Package Setup
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\usetikzlibrary{arrows,shapes,shadows,decorations.text,positioning,automata,shapes.geometric}
-
\savesymbol{u}
\savesymbol{v}
+\usetikzlibrary{arrows,shapes,shadows,decorations.text,positioning,automata,shapes.geometric}
+
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Standard Commands
+% Standard Environments and Macros
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-\DeclareMathOperator*{\argmin}{arg\,min}
-\DeclareMathOperator*{\argmax}{arg\,max}
\newtheorem{defn}{Definition}
\newtheorem{problem}{Problem}
\newtheorem{remark}{Remark}
-
\newtheorem{theorem}{Theorem}[chapter]
\newenvironment{proof}{\noindent\textbf{Proof.} }{$\Box$}
+\newcommand{\cmark}{\textcolor{green!80!black}{\ding{51}}}
+\newcommand{\xmark}{\textcolor{red}{\ding{55}}}
+\newcommand{\revision}[1]{\textcolor{blue}{{#1}}}
+\newcommand{\attention}[1]{\textcolor{red}{{#1}}}
+\newcommand{\spara}[1]{\subsubsection*{\textnormal{\textbf{#1}}}}
+
+\definecolor{forestgreen}{rgb}{0.13, 0.55, 0.13}
+
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+% Standard Math Commands
+%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
+
+\DeclareMathOperator*{\argmin}{arg\,min}
+\DeclareMathOperator*{\argmax}{arg\,max}
+
\newcommand{\R}{\mathbb{R}}
\newcommand{\E}{\mathbb{E}}
\newcommand{\identitymat}{\mathbb{I}}
\newcommand{\np}{\ensuremath{\mathbf{NP}}\xspace}
-\newcommand{\bigObound}{\ensuremath{\mathcal{O}}\xspace}
\newcommand{\smallObound}{\ensuremath{o}\xspace}
\newcommand{\Thetabound}{\ensuremath{\Theta}\xspace}
\newcommand{\Omegabound}{\ensuremath{\Omega}\xspace}
+\newcommand{\bigObound}{\ensuremath{\mathcal{O}}\xspace}
\newcommand{\norm}[1]{\|#1\|}
-\newcommand{\inner}[2]{\langle #1, #2 \rangle}
\newcommand{\round}[1]{\left(#1\right)}
-\newcommand{\braces}[1]{\left\{#1\right\}}
\newcommand{\squares}[1]{\left[#1\right]}
+\newcommand{\braces}[1]{\left\{#1\right\}}
+\newcommand{\inner}[2]{\langle #1, #2 \rangle}
\newcommand{\product}[1]{\left\langle#1\right\rangle}
-\newcommand{\cmark}{\textcolor{green!80!black}{\ding{51}}}
-\newcommand{\xmark}{\textcolor{red}{\ding{55}}}
-
-\newcommand{\spara}[1]{\subsubsection*{\textnormal{\textbf{#1}}}}
-
-\newcommand{\revision}[1]{\textcolor{blue}{{#1}}}
-\newcommand{\attention}[1]{\textcolor{red}{{#1}}}
-
-\definecolor{forestgreen}{rgb}{0.13, 0.55, 0.13}
-
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
-% Thesis Specific Commands
+% Thesis-Specific Commands
%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%%
% algorithms
diff --git a/thesis/review_version/sample_article_1.tex b/thesis/review_version/sample_article_1.tex
index 59d9d3d..d25f682 100755
--- a/thesis/review_version/sample_article_1.tex
+++ b/thesis/review_version/sample_article_1.tex
@@ -2,10 +2,22 @@
% Original Paper 1
% ******************************************************************************
+
% insert title of paper here
-\chapter*{Paper I}\thispagestyle{empty}
-\note{I}{-222pt}{black}
+\chapter*{Paper 1}\thispagestyle{empty}
+% \note{IOI}{-237.1063pt}{black}
+% \note{I}{0pt}{black}
+% \note{IO}{-5pt}{black}
+% \note{II}{-237.1063pt}{black}
+% \note{I}{-468.32pt}{black}
%\notee{-222pt}{\dvWHITE}
+\the\paperheight \the\textheight \the\voffset \the\topmargin
+
+% \marginpar{\vspace{0pt}\colorbox{red}{\parbox[c][\textheight][t]{\textwidth}{\the\paperheight \\ \the\textheight \\ \the\voffset \\ \the\topmargin}}}
+
+\marginpar{\vspace{-220pt}\colorbox{white}{\parbox[c][\dvheight][t]{34.8pt}{\vspace{0.3cm}\color{white}\centering\Huge{\textbf{O}}}}}
+\marginpar{\vspace{-4.5pt}\colorbox{black}{\parbox[c][\dvheight][t]{34.8pt}{\vspace{0.3cm}\color{white}\centering\Huge{\textbf{I}}}}}
+\marginpar{\vspace{-50.5pt}\colorbox{black}{\parbox[c][\dvheight][t]{34.8pt}{\vspace{0.3cm}\color{white}\centering\Huge{\textbf{II}}}}}
% Here it's not necessary to draw the following boxes to position right,
% and drawing them occasionally creates unwanted gray lines
diff --git a/thesis/review_version/thesis.tex b/thesis/review_version/thesis.tex
index b31547c..7c67e67 100755
--- a/thesis/review_version/thesis.tex
+++ b/thesis/review_version/thesis.tex
@@ -6,10 +6,8 @@
\input{macros}
-% modify section on Interleaf pages based on number of articles in the thesis
\input{frontmatter}
-\pagestyle{empty}
\begin{document}
\frontmatter
@@ -22,27 +20,26 @@
\tableofcontents
-% ******************************************************************************
-% Preamble
-% ******************************************************************************
-
\input{list_of_publications}
-% chapters in the introductory section of an article based thesis
\mainmatter
-% introduction to the thesis
+% aligns page numbers correctly by flushing them to the left/right
+\fancyheadoffset[LE,RO]{0cm}
+\fancyhead[RO,LE]{\thepage}
+
+% ******************************************************************************
+% Preamble
+% ******************************************************************************
+
\input{introduction}
-% one chapter per article (probably)
\input{summary_article_1}
\input{summary_article_2}
-% conclusion to the thesis
\input{conclusion}
-% references in the preamble of the thesis
\bibliographystyle{abbrvnat}
\bibliography{references}
@@ -50,7 +47,6 @@
% Articles
% ******************************************************************************
-% include original articles
\input{sample_article_1}
\input{sample_article_2}
@@ -59,8 +55,6 @@
\input{sample_article_4}
-% \input{sample_article_5}
-
% ******************************************************************************
% Backmatter
% ******************************************************************************
--
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