diff --git a/.gitignore b/.gitignore
index e962d50a610e697b913b15c75b44108180329d11..f25b16fd1e128318ce60154833bd475de876dfd8 100644
--- a/.gitignore
+++ b/.gitignore
@@ -13,3 +13,12 @@ HY-CS-main.run.xml
 HY-CS-main.synctex.gz
 HY-CS-main.toc
 msc_english_contents.aux
+Ch.00_Abstract.aux
+Ch.10_Introduction.aux
+Ch.20_Methods.aux
+Ch.30_Results.aux
+Ch.40_Discussion.aux
+Ch.50_Conclusions.aux
+Ch.90_Appendix_1.aux
+instructions/instructions_english.aux
+instructions/instructions_finnish.aux